PUBLICATIONS

2025

1. ICML

   A Physics-Augmented Deep Learning Framework for Classifying Single Molecule Force Spectroscopy Data

   Cailong Hua, Sivaraman Rajaganapathy, Rebecca A Slick, Joseph Vavra, Joe M Muretta, James M Ervasti, and Murti V Salapaka

   Forty-second International Conference on Machine Learning, 2025

   Bib HTML

   @article{hua2025identification,
     title = {A Physics-Augmented Deep Learning Framework for Classifying Single Molecule Force Spectroscopy Data},
     author = {Hua, Cailong and Rajaganapathy, Sivaraman and Slick, Rebecca A and Vavra, Joseph and Muretta, Joe M and Ervasti, James M and Salapaka, Murti V},
     journal = {Forty-second International Conference on Machine Learning},
     year = {2025},
   }

2. PNAS

   Multiple modes of AFM reveal distinct mechanical properties for dystrophin and utrophin not manifest by small fragments

   Cailong Hua, Joseph Vavra, Jacob Powers, Joe M Muretta, James M Ervasti, and Murti V Salapaka

   Proceedings of the National Academy of Sciences of the United States of America (Under Review), 2025

   Bib

   @article{hua2025multipleafm,
     title = {Multiple modes of AFM reveal distinct mechanical properties for dystrophin and utrophin not manifest by small fragments},
     author = {Hua, Cailong and Vavra, Joseph and Powers, Jacob and Muretta, Joe M and Ervasti, James M and Salapaka, Murti V},
     journal = {Proceedings of the National Academy of Sciences of the United States of America (Under Review)},
     year = {2025},
   }

3. PRE

   Quantifying errors in the Jarzynski estimator

   Sivaraman* Rajaganapathy, Cailong* Hua, and Murti V Salapaka

   Physical Review E. (under review), 2025

   Bib

   @article{rajaganapathy2025PRE,
     title = {Quantifying errors in the Jarzynski estimator},
     author = {Rajaganapathy, Sivaraman and Hua, Cailong and Salapaka, Murti V},
     journal = {Physical Review E. (under review)},
     year = {2025},
   }

2024

1. bioRxiv

   Two operational modes of atomic force microscopy reveal similar mechanical properties for homologous regions of dystrophin and utrophin

   Cailong Hua, Rebecca A Slick, Joseph Vavra, Joseph M Muretta, James M Ervasti, and Murti V Salapaka

   bioRxiv, 2024

   Bib HTML

   @article{hua2024two,
     title = {Two operational modes of atomic force microscopy reveal similar mechanical properties for homologous regions of dystrophin and utrophin},
     author = {Hua, Cailong and Slick, Rebecca A and Vavra, Joseph and Muretta, Joseph M and Ervasti, James M and Salapaka, Murti V},
     journal = {bioRxiv},
     year = {2024},
   }

2023

1. JBC

   Phosphorylation alters the mechanical stiffness of a model fragment of the dystrophin homologue utrophin

   Maria Paz Ramirez, Sivaraman Rajaganapathy, Anthony R Hagerty, Cailong Hua, Gloria C Baxter, Joseph Vavra, Wendy R Gordon, Joseph M Muretta, Murti V Salapaka, and James M Ervasti

   Journal of Biological Chemistry, 2023

   Bib HTML

   @article{ramirez2022phosphorylation,
     title = {Phosphorylation alters the mechanical stiffness of a model fragment of the dystrophin homologue utrophin},
     author = {Ramirez, Maria Paz and Rajaganapathy, Sivaraman and Hagerty, Anthony R and Hua, Cailong and Baxter, Gloria C and Vavra, Joseph and Gordon, Wendy R and Muretta, Joseph M and Salapaka, Murti V and Ervasti, James M},
     journal = {Journal of Biological Chemistry},
     pages = {102847},
     year = {2023},
     publisher = {Elsevier},
   }